Table 1. | Passive and active DNA methylation and the interplay with genetic variation in gene regulation

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Passive and active DNA methylation and the interplay with genetic variation in gene regulation

Table 1.

Affiliation details

University of Geneva Medical School, Switzerland; Institute of Genetics and Genomics in Geneva, Switzerland; Swiss Institute of Bioinformatics, Switzerland; Stanford University, United States
Table 1. Summary of main association analyses in GenCord.

See Table 1–source data 1

DOI: http://dx.doi.org/10.7554/eLife.00523.011

Table 1—source data 1.

Significant eQTL, mQTL and eQTM associations found in each cell-type.

DOI: http://dx.doi.org/10.7554/eLife.00523.012

Download source data [table-1—source-data-1.media-1.zip]
TestSamplesWindow sizeUnitFDR (%)Nominal p valueFibroblastsLCLsT-cells
eQTLsGenotypes and expression183 (F); 185 (L); 186 (T)1 MbGenes102.2 × 10−5 (F); 3.2 × 10−5 (L); 1.8 × 10−5 (T)243333722115
mQTLsGenotypes and methylation107 (F); 111 (L); 66 (T)5 kbMethylation sites104.4 × 10−4 (F); 7.9 × 10−4 (L); 1.3 × 10−3 (T)14,18922,41132,318
eQTMsMethylation and expression110 (F); 118 (L); 66 (T)50 kbGenes107.6 × 10−5 (F); 7 × 10−4 (L); 6.9 × 10−4 (T)59636803838