Clathrin coat controls synaptic vesicle acidification by blocking vacuolar ATPase activity

  1. Zohreh Farsi
  2. Sindhuja Gowrisankaran
  3. Matija Krunic
  4. Burkhard Rammner
  5. Andrew Woehler
  6. Eileen M Lafer
  7. Carsten Mim
  8. Reinhard Jahn
  9. Ira Milosevic  Is a corresponding author
  1. Max Planck Institute for Biophysical Chemistry, Germany
  2. European Neuroscience Institute (ENI), Germany
  3. Sciloop, Germany
  4. Max Delbrück Center for Molecular Medicine, Germany
  5. University of Texas Health Science Center, United States
  6. Kungliga Tekniska Högskolan, Sweden

Abstract

Newly-formed synaptic vesicles (SVs) are rapidly acidified by vacuolar adenosine triphosphatases (vATPases), generating a proton electrochemical gradient that drives neurotransmitter loading. Clathrin-mediated endocytosis is needed for the formation of new SVs, yet it is unclear when endocytosed vesicles acidify and refill at the synapse. Here, we isolated clathrin-coated vesicles (CCVs) from mouse brain to measure their acidification directly at the single vesicle level. We observed that the ATP-induced acidification of CCVs was strikingly reduced in comparison to SVs. Remarkably, when the coat was removed from CCVs, uncoated vesicles regained ATP-dependent acidification, demonstrating that CCVs contain the functional vATPase, yet its function is inhibited by the clathrin coat. Considering the known structures of the vATPase and clathrin coat, we propose a model in which the formation of the coat surrounds the vATPase and blocks its activity. Such inhibition is likely fundamental for the proper timing of SV refilling.

Data availability

The structure has been deposited with the EMDB-ID #4335.For additional information considering structure please contact Prof Dr Carsten Mim at carsten.mim@ki.se

The following data sets were generated

Article and author information

Author details

  1. Zohreh Farsi

    Department of Neurobiology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
    Competing interests
    No competing interests declared.
  2. Sindhuja Gowrisankaran

    Synaptic Vesicle Dynamics Group, European Neuroscience Institute (ENI), Göttingen, Germany
    Competing interests
    No competing interests declared.
  3. Matija Krunic

    Synaptic Vesicle Dynamics Group, European Neuroscience Institute (ENI), Göttingen, Germany
    Competing interests
    No competing interests declared.
  4. Burkhard Rammner

    Sciloop, Hamburg, Germany
    Competing interests
    No competing interests declared.
  5. Andrew Woehler

    Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, Berlin, Germany
    Competing interests
    No competing interests declared.
  6. Eileen M Lafer

    Department of Biochemistry and Structural Biology, University of Texas Health Science Center, San Antonio, United States
    Competing interests
    No competing interests declared.
  7. Carsten Mim

    Department for Biomedical Engineering and Health Solutions, Kungliga Tekniska Högskolan, Huddinge, Sweden
    Competing interests
    No competing interests declared.
  8. Reinhard Jahn

    Department of Neurobiology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
    Competing interests
    Reinhard Jahn, Reviewing editor, eLife.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1542-3498
  9. Ira Milosevic

    Synaptic Vesicle Dynamics Group, European Neuroscience Institute (ENI), Göttingen, Germany
    For correspondence
    imilose@gwdg.de
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-6440-3763

Funding

Deutsche Forschungsgemeinschaft (Emmy Noether Young Investigator Award MI-1702/1)

  • Ira Milosevic

Human Frontier Science Program (Young Investigator Grant RGY0074/16)

  • Carsten Mim

Schram Stiftung (T287/25457)

  • Ira Milosevic

Engelhorn Stiftung (Postdoc fellowship)

  • Zohreh Farsi

Synaptic System PhD fellowship (PhD fellowship)

  • Sindhuja Gowrisankaran

National Institutes of Health (GM118933)

  • Eileen M Lafer

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Reviewing Editor

  1. Margaret S. Robinson, University of Cambridge, United Kingdom

Ethics

Animal experimentation: Animal experiments were conducted according to the European Guidelines for animal welfare (2010/63/EU) with approval by the Lower Saxony Landesamt fur Verbraucherschutz und Lebensmittelsicherheit (LAVES), registration number 14/1701.

Version history

  1. Received: October 6, 2017
  2. Accepted: April 7, 2018
  3. Accepted Manuscript published: April 13, 2018 (version 1)
  4. Version of Record published: May 4, 2018 (version 2)

Copyright

© 2018, Farsi et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 4,341
    views
  • 756
    downloads
  • 31
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Zohreh Farsi
  2. Sindhuja Gowrisankaran
  3. Matija Krunic
  4. Burkhard Rammner
  5. Andrew Woehler
  6. Eileen M Lafer
  7. Carsten Mim
  8. Reinhard Jahn
  9. Ira Milosevic
(2018)
Clathrin coat controls synaptic vesicle acidification by blocking vacuolar ATPase activity
eLife 7:e32569.
https://doi.org/10.7554/eLife.32569

Share this article

https://doi.org/10.7554/eLife.32569

Further reading

    1. Neuroscience
    Ya-Hui Lin, Li-Wen Wang ... Li-An Chu
    Research Article

    Tissue-clearing and labeling techniques have revolutionized brain-wide imaging and analysis, yet their application to clinical formalin-fixed paraffin-embedded (FFPE) blocks remains challenging. We introduce HIF-Clear, a novel method for efficiently clearing and labeling centimeter-thick FFPE specimens using elevated temperature and concentrated detergents. HIF-Clear with multi-round immunolabeling reveals neuron circuitry regulating multiple neurotransmitter systems in a whole FFPE mouse brain and is able to be used as the evaluation of disease treatment efficiency. HIF-Clear also supports expansion microscopy and can be performed on a non-sectioned 15-year-old FFPE specimen, as well as a 3-month formalin-fixed mouse brain. Thus, HIF-Clear represents a feasible approach for researching archived FFPE specimens for future neuroscientific and 3D neuropathological analyses.

    1. Neuroscience
    Amanda Chu, Nicholas T Gordon ... Michael A McDannald
    Research Article

    Pavlovian fear conditioning has been extensively used to study the behavioral and neural basis of defensive systems. In a typical procedure, a cue is paired with foot shock, and subsequent cue presentation elicits freezing, a behavior theoretically linked to predator detection. Studies have since shown a fear conditioned cue can elicit locomotion, a behavior that - in addition to jumping, and rearing - is theoretically linked to imminent or occurring predation. A criticism of studies observing fear conditioned cue-elicited locomotion is that responding is non-associative. We gave rats Pavlovian fear discrimination over a baseline of reward seeking. TTL-triggered cameras captured 5 behavior frames/s around cue presentation. Experiment 1 examined the emergence of danger-specific behaviors over fear acquisition. Experiment 2 examined the expression of danger-specific behaviors in fear extinction. In total, we scored 112,000 frames for nine discrete behavior categories. Temporal ethograms show that during acquisition, a fear conditioned cue suppresses reward seeking and elicits freezing, but also elicits locomotion, jumping, and rearing - all of which are maximal when foot shock is imminent. During extinction, a fear conditioned cue most prominently suppresses reward seeking, and elicits locomotion that is timed to shock delivery. The independent expression of these behaviors in both experiments reveal a fear conditioned cue to orchestrate a temporally organized suite of behaviors.